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Dairy, Veterinary & Animal Research

Research Article Volume 12 Issue 1

Prevalence and antibiotic resistance of Salmonella spp. and Escherichia coli isolated from poultry farms in the North Vietnam

Chu Thi Thanh Huong,1 Pham Thi Ngoc,2 Truong Ha Thai1

1Department of Microbiology – Infectious Diseases, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Trau Quy, Gia Lam, Ha Noi, Vietnam
2Department of Veterinary Hygiene, National of Institute Veterinary Research, Truong Chinh, Dong Da, Ha Noi, Vietnam

Correspondence: Truong Ha Thai, Department of Microbiology – Infectious Diseases, Faculty of Veterinary Medicine, Vietnam National University of Agriculture, Trau Quy, Gia Lam, Ha Noi, Vietnam

Received: June 01, 2023 | Published: June 14, 2023

Citation: Huong CTT, Ngoc PT, Thai TH. Prevalence and antibiotic resistance of Salmonella spp. and Escherichia coli isolated from poultry farms in the North Vietnam. J Dairy Vet Anim Res. 2023;12(1):70-75 DOI: 10.15406/jdvar.2023.12.00326

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Abstract

Salmonella spp. and E. coli isolated from 515 samples collected from poultry farms at the north Vietnam. The results showed that the presence of E. coli in the poultry farm was 59.4%. The highest positive rate was fecal samples 78.0%; following by sewages samples (77.8%), poultry house floors swap samples (68.0%), drinking water (17.8%), tools samples (16.7%) and none of 45 food samples were E. coli positive isolation. In this study, 37 samples (7.2%) were Salmonella positive isolation including 10.0% fecal samples; 9.3% poultry house floors swap and 6.7% seweages samples. The E.coli isolates were highly resistant to tetracycline (85.3%), streptomycin (83.3%), ampicillin (61.8%), trimethoprim (56.9%) and nalidixic acid (55.9%). They were low resistant to ceftazidime (6.9%) and nitrofurantoin (12.7%). The other antibiotics such as norfloxacin, ciprofloxacin and gentamicin were resisted by E.coli isolates range from 15.7% to 32.4%. In our results, the Salmonella isolates were commonly resistant to streptomycin (89.2%), tetracycline (83.8%) and ampicillin (59.5%). Three antibiotic such as ciprofloxacin, gentamicin and norfloxacin were resisted by the Salmonella isolates with the similar rates (21.6%). Salmonella isolates showed resistance to ceftazidime at the lowest rate (16.2%). Of the isolated trains, 65.7% of the E. coli and 62.2% of the Salmonella isolates showed multi-drug resistance. The data suggest that detection of resistance isolates from chicken, poultry environment, and humans need for one health consideration in the usage of antibiotics in the poultry industry.

Keywords: antibiotic resistance, E. coli, poultry farms, Salmonella Spp, vietnam

Introduction

Antibiotics have been used widely in in farm animals, especially for poultry production to treat and prevent bacterial infections and as growth promoters in feeds.1–3 However, it is now generally known that the widespread use of antibiotics is the main risk factor for an increase in the occurrence of bacterial resistant strains.4,5 The emergence and dissemination of antibiotic-resistant bacterial strains like Salmonella and Escherichia coli from poultry products are reported to be high and are increasing worldwide.3,6 Beside, antibiotic-resistant Salmonella and E. coli strains involved the human diseases are mostly spread from food and farm animals.7–9 Therefore, it is necessary to know where the origin sources of antibiotic-resistant bacteria which were contaminated to the food production chains; and any knowledge about that might provide valuable information to reduce the sources of contamination with resistant bacteria during food processing and thus to minimize the risk for the consumer. Thus, given the health risks linked to the presence of E. coli and Salmonella in both poultry production and human health, as well as the antibiotic resistance issue posed by these germs in public health, regular monitoring of their resistance to antibiotics in poultry farming is essential.1,10

However, as far as we are aware, there have not been any reports about the occurrence of antibiotic-resistant bacteria in commercial poultry farms in Vietnam. The aim of this study is to detect the prevalence and antibiotic resistance rates of Salmonella and E. coli at poultry farms in the North Vietnam in order to provide the useful information for the food safety and public health in Vietnam.

Material and methods

For the samples collection, during three years, from January 2011 to December 2013, 515 samples collected from 45 flocks of 15 poultry farms located in three provinces (Bac Ninh, Hai Duong, Vinh Phuc) and two cities (Ha Noi, Hai Phong) at the north Vietnam including fecal samples (n=200), poultry house floors (n=150), drinking waters (n=45), poultry foods (n=45), sewages (n=45) and tools (n=30); Swab samples (poultry house floors, tools) were sampled by autoclaved cottons in an area approximately 20 cm2 and placed in sterile bags with 90 mL of buffered peptone water (BPW); approximately 100 mL of drinking waters and sewages were taken to 200 mL bottle and then 10 mL was mixed with 90 mL of BPW; approximately 10 gram of fecal samples and 250 gram of poultry food samples were taken to the sterilized plastic bags. All samples were kept on ice box during the transportation and characterized on the arrival day at the laboratory of Department of Veterinary hygiene, National of Institute veterinary research, Vietnam.

For the bacteria isolation, at the laboratory 1 gram of substance from fecal samples; 25 gram of food samples were homologized with BPW following the ratio 1:9; the bags of swap samples, drinking and seweages samples at the samples collection step also incubated at 370C within 18 – 24 hr for pre-enrichment. The next steps for Salmonella isolation were previously described.11 For E. coli isolation, 0.1 mL of the 18 - 24h incubated pre-enrichment cultures was continuously incubated onto eosin methylene blue agar (EMB) at 37°C for 24 hr. Only one typical colony producing metallic sheen on EMB agar were isolated and streaked into the triple sugar iron agar (TSI) tube and incubated at 37°C for 24 hr. The colonies in TSI agar showed typical E. coli behaviors, such as glucose and lactose fermentation with gas production and the absence of H2S, were confirmed by gram staining and a biochemical series based on citrate utilisation, indol production, methyl red and Voges-Proskauer reactions.

For the antibiotic susceptibility testing, in 2021, thirty seven isolated Salmonella and one hundered isolated E.coli strains were randomly selected to characterize the antibiotic susceptibility at the Laboratory of the Faculty of Veterinary medicine, Vietnam national university of agriculture, Hanoi, Vietnam. The antibiotic susceptibility of isolates was determined according to the guidelines of the Clinical and Laboratory Standards Institute.12 Agar diffusion assays were performed on Muller - Hinton agar with disks containing 10 different antibiotic agents (Oxoid, UK). The tested antibiotics were as follows: ampicillin (Am), 10 μg; ceftazidime (Cf), 30μg; ciprofloxacin (Ci), 5μg; gentamicin (Ge), 10μg; nalidixic acid (Na), 30 μg; norfloxacin (Nor), 10μg; streptomycin (St), 10μg; tetracycline (Te), 30μg; trimethoprim (Tm), 5 μg and nitrofurantoin (Ni), 300μg. The susceptible, intermediate or resistant interpretive categories were used according to CLSI guidelines.13 Multi drug-resistant (MDR) strains were defined when it showed the resistance to at least one antibiotic in three or more different categories.14 In our study, antibiotic classes included: Aminoglycosides (gentamicin, streptomycin); β - Lactams (ampicillin, ceftazidime); Pyrimidine (trimethoprim); Quinolones (ciprofloxacin, norfloxacin, nalidixic acid); Tetracyclines (tetracycline) and Nitrofuran (nitrofurantoin).

Data and statistical analysis, statistical comparison of the prevalence, antibiotic resistance rates between Salmonella and Escherichia coli from different sources was analyzed by the Chi-square test (Microsoft Excel 2016).

Results

The percentage of E.coli and Salmonella positive samples collected from poultry farms shown in the Table 1. Overall, the presence of E. coli in the poultry farm was quite high, 306/515 (59.4%) examined samples. The highest positive rate was fecal samples 156/200 (78.0); following by seweages samples 35/45 (77.8%), then poultry house floors swap samples 102/150 (68.0%); the positive rates of drinking warter and tools samples were 8/45 (17.8%) and 5/30 (16.7%), respectively; and none of 45 food samples were E. coli positive isolation. Thirty seven of 515 (7.2%) samples were Salmonella positive isolation. Among them, Salmonella was detected from 20/200 (10.0%) fecal samples; the prevalence of Salmonella in poultry house floors swap and seweages samples were 14/150 (9.3%) and 3/45 (6.7%), respectively; there were no Salmonella contamination with the tools, poultry food and drinking samples.

No.

Samples

No. of examined samples

E. coli n (%)

Salmonella n (%)

1

Fecal samples

200

156 (78.0)

20 (10.0)

2

Poultry house floors

150

102 (68.0)

14 (9.3)

3

Tools

30

5 (16.7)

0 (0.0)

4

Poultry food

45

0 (0.0)

0 (0.0)

5

Drinking warter

45

8 (17.8)

0 (0.0)

6

Seweages

45

35 (77.8)

3 (6.7)

7

Total

515

306 (59.4)

37 (7.2)

Table 1 The prevalance of Salmonella spp and Escherichia coli isolated at poultry farms

Antibiotic susceptibility of the E.coli isolates were shown in the Table 2 and Table 3. The E.coli isolates were highly resistant to tetracycline (85.3%), streptomycin (83.3%), ampicillin (61.8%), trimethoprim (56.9%) and nalidixic acid (55.9%). They were low resistant to ceftazidime (6.9%) and nitrofurantoin (12.7%). The other antibiotics such as norfloxacin, ciprofloxacin and gentamicin were resisted by E.coli isolates range from 15.7% to 32.4%. A total of 29 antibiotypes were obtained from the E. coli isolates, only six strains shown the sensitivity to all of ten antibiotics. And 67/102 (65.7%) of the E. coli strains showed multi drug-resistant (resisted at least three different antibiotic classes). More than half (52/102 – 51.0%) were resistant to at least five antibiotics. Fifty five (14.7%) strain was recorded against five antibiotics belong to five different classes; only one isolate was resistant to all compounds tested. The most commonly found resistance patterns are listed in Table 4. The resistance profile was the most prevalent (14.7%), which was resistant to Na – Tm – Am – St – Te; the patterns Ge – Na – Tm – Am – St – Te, was observed in ten (9.8%) of the E coli isolates.

No.

Antibiotics

Results

Sensitivity n (%)

Intermediate n (%)

Resistance n (%)

1

Ampicillin

8 (7.8)

31 (30.4)

63 (61.8)

2

Ciprofloxacin

62 (60.8)

21 (20.6)

20 (19.6)

3

Ceftazidime

64 (62.7)

31 (30.4)

7 (6.9)

4

Gentamicin

51 (50.0)

18 (17.6)

33 (32.4)

5

Nalidixic acid

19 (18.6)

26 (25.5)

57 (55.9)

6

Nitrofurantoin

53 (52.0)

36 (35.3)

13 (12.7)

7

Norfloxacin

59 (57.8)

27 (26.5)

16 (15.7)

8

Streptomycin

0 (0.0)

17 (16.7)

85 (83.3)

9

Trimethoprim

11 (10.8)

33 (32.3)

58 (56.9)

10

Tetracycline

5 (4.9)

10 (9.8)

87 (85.3)

Table 2 The antibiotic resistance of Escherichia coli isolated at the poultry farms (n = 102)

No.

Pattents

n(%)

No. of antibiotics resisitance

No. of antibiotics class

1

Na

4 (3.9)

1

1

2

St

2 (2.0)

1

1

3

Te

7 (6.9)

1

1

4

AmSt

1 (1.0)

2

2

5

StTe

15 (14.7)

2

2

6

GeStTe

1 (1.0)

3

2

7

TmAmSt

2 (2.0)

3

3

8

TmStTe

3 (2.9)

3

3

9

AmStTe

3 (2.9)

3

3

10

NiNaTe

1 (1.0)

3

3

11

NaAmStTe

4 (3.9)

4

4

12

TmAmStTe

1 (1.0)

4

4

13

NaTmAmStTe

15 (14.7)

5

5

14

GeTmAmStTe

3 (2.9)

5

4

15

GeNaTmAmStTe

10 (9.8)

6

5

16

NiGeTmAmStTe

1 (1.0)

6

5

17

CiNaTmAmStTe

2 (2.0)

6

5

18

NiGeNaTmAmStTe

2 (2.0)

7

6

19

CiGeNaTmAmStTe

2 (2.0)

7

5

20

NoGeNaTmAmStTe

2 (2.0)

7

5

21

NiCiGeNaTmAmStTe

1 (1.0)

8

6

22

NoCiGeNaTmAmStTe

3 (3.0)

8

5

23

CefNoGeNaTmAmStTe

2 (2.0)

8

5

24

NiNoGeNaTmAmStTe

1 (1.0)

8

6

25

CefNiNoCiNaTmAmStTe

2 (2.0)

9

6

26

CefNoCiGeNaTmAmStTe

1 (1.0)

9

6

27

NiNoCiGeNaTmAmStTe

3 (2.9)

9

6

28

CefNiNoCiNaTmAmStTe

1 (1.0)

9

6

29

CefNiNoCiGeNaTmAmStTe

1 (1.0)

10

7

Table 3 Antibiotic resistance pattents of E. coli trains isolated from the poultry farms

Antibiotic susceptibility of the Salmonella isolates were presented in the Table 4 and Table 5. The Salmonella isolates were commonly resistant to streptomycin (89.2%), tetracycline (83.8%) and ampicillin (59.5%). Three antibiotic such as ciprofloxacin, gentamicin and norfloxacin were resisted by the Salmonella isolates with the similar rates (21.6%). Salmonella isolates showed resistance to ceftazidime at the lowest rate (16.2%). The antibiotic resistance rates of nalidixic acid and trimethoprim were 43.2% and 54.1%, respectively. There were thirty six Salmonella strains among the thirty seven isolates that showed resistant to at least one antibiotics. And twenty seven different resistance patterns were recorded. In particular, 23/37 (62.2%) of the Salmonella isolates showed the multi drug-resistance. Sixty multi drug-resistant Salmonella isolates predominantly resisted to 3 - 7 antibiotics belong to 3 -5 different antibiotic classes, the predominant MDR profile was Na-Tm-Am-St-Te (10.8%) and No-Ci-Na-Tm-Am-St-Te (8.1%). Interestingly, there were four Salmonella strains could resisted to 8 – 10 antibiotics belong to 6 different antibiotic classes.

No.

Antibiotics

Results

Sensitivity n (%)

Intermediate n (%)

Resistance n (%)

1

Ampicillin

4 (10.8)

11 (29.7)

22 (59.5)

2

Ciprofloxacin

24 (64.9)

5 (13.5)

8 (21.6)

3

Ceftazidime

23 (62.2)

8 (21.6)

6 (16.2)

4

Gentamicin

25 (67.6)

4 (10.8)

8 (21.6)

5

Nalidixic acid

13 (35.1)

8 (21.6)

16 (43.2)

6

Nitrofurantoin

21 (56.8)

6 (16.2)

10 (27.0)

7

Norfloxacin

24 (64.9)

5 (13.5)

8 (21.6)

8

Streptomycin

0 (0.0)

4 (10.8)

33 (89.2)

9

Trimethoprim

12 (32.4)

5 (12.5)

20 (54.1)

10

Tetracycline

2 (5.4)

4 (10.8)

31 (83.8)

Table 4 The antibiotic resistance of Salmonella spp isolated at the poultry farms (n = 37)

No.

Pattents

n (%)

No. of antibiotics resisitance

No. of antibiotics class

1

Na

1 (2.7)

1

1

2

St

2 (5.4)

1

1

3

Te

2 (5.4)

1

1

4

TmSt

2 (5.4)

2

2

5

StTe

6 (16.2)

2

2

6

AmStTe

3 (8.1)

3

3

7

NiAmStTe

1 (2.7)

4

4

8

NaTmAmStTe

4 (10.8)

5

5

9

NiNaTmStTe

1 (2.7)

5

5

10

CefNiAmStTe

1 (2.7)

5

4

11

CefGeTmAmStTe

1 (2.7)

6

4

12

NiGeTmAmStTe

2 (5.4)

6

5

13

CefGeNaTmAmStTe

1 (2.7)

7

5

14

NoCiNaTmAmStTe

3 (8.1)

7

5

15

CefNiGeTmAmStTe

1 (2.7)

8

5

16

CefNoCiNaTmAmStTe

1 (2.7)

8

5

17

NiNoCiNaTmAmStTe

1 (2.7)

8

6

18

NiNoCiGeNaTmAmStTe

2 (5.4)

9

6

19

CefNiNoCiGeNaTmAmStTe

1 (2.7)

10

6

Table 5 Antibiotic resistance pattents of Salmonella strains isolated from the poultry farms

Discussion

Salmonella contamination of poultry and derivative products occurs at different levels. Thirty seven (7.2%) of the 515 poultry farms samples were contaminated with Salmonella. The isolation rate varied according to the origin of the sample, 10.0% for fecal samples, 9.3% for poultry house floor swaps and 6.7% for the seweage samples. The other report in Vietnam15 shown that, Salmonella was present in the poultry farms samples such as dinking warter, bedding, feed, chicken feces and environmental samples ranged from 0.7% to 7.7%. Around the world, the Salmonella spp. prevalence varied considerably among regions and countries such as in several European countries. The reported prevalence was in France (3.4%), Italy (9.2%), Germany (2.7%), Spain (1.02%), Poland (1.57%) and Sweden (nearly 0%).16–18 The isolation rate varied from 2.8% to 15.9% according to the origin of the sample at the Afican countries such as Algeria, Ethiopia and Nigeria.19–21 The prevalence of Salmonella in broiler farms at Colombia22 was higher than that in our research (26.7%). However, Salmonella was only isolated in 6.7% of the poultry litter samples in the southern United States.7 The prevalence of non-typhoidal Salmonella can be found in environmental reservoirs, infections from which are challenging to control.10 In chicken farms, Salmonella can be transmitted through feces, vehicles, workers, clothing, footwear, equipment, water, food, garbage, animals, and other factors.23

In this study we examined antibiotic resistance in commensal E. coli isolates from chicken farms in some provices and cities in the north of Vietnam. The high level of E. coli resistance in chicken farms is a public health concern, this may also be an indicator of emerging resistance in other gut microflora within the chicken population. The isolates were highly resistant to tetracycline (85.3%), streptomycin (83.3%), ampicillin (61.8%), trimethoprim (56.9%) and nalidixic acid (55.9%). High resistance of E.coli isolated from chicken farms to broad-spectrum antibiotics have been reported in Vietnam.15 The authors reported that E. coli were highly resistant to tetracycline (93.4%), and ampicillin (86.0%), and Trimethoprim/sulfamethoxazole (69.7%). The significant proportion of resistance against the above antibiotics was also reported from Ghana, Nigeria and China.24–26 The observed high prevalence of antibiotic resistance reflects the common use of antibiotic products for therapeutic and prophylactic purposes, as found in our survey on antibiotic drug usage.18 In contrast, in this study, isolated E.coli strains showed relatively lower grade of resistance against third generation cephalosporins (ceftazidime – 6.9%), quinolones group (norfloxacin – 15.7% and ciprofloxacin – 19.6%). This finding is supported by other studies showing lower resistance rates against the above antibiotics.27–29 However, data from seven European countries suggest a higher prevalence of ciprofloxacin resistance (57.6%), while data from five European countries indicate a higher prevalence of ceftazidime resistance (11.1%) in bacteria isolated from chickens in these countries.30,31 Although such comparisons should be interpreted with caution because of differences in sampling methods as well as differences in the breakpoints used for interpreting susceptibility test results between studies from different regions.

Antibiotic resistance may arise due to the indiscriminate use of antimicrobials and their use as growth promoters and chemotherapeutic agents to control diseases at farms.18 Most Salmonella isolates in this study showed relative resistance to streptomycin (89.2%), tetracycline (83.8%) which have been used to treat salmonellosis since many years in Vietnam. The use of antibiotics over long periods thus favors the selection of resistant bacterial strains. The high percentage of Salmonella isolates resisted to the antibiotic above in current research is in line with the previous reports in Bangladesh and Vietnam.32,33 In curent research, the Salmonella isolates resisted to ampicillin at high level rate (59.5%). Our results were in line with reports from Myanmar, 47.1%; Malaysia, 72.7% and Singapore, 78.8%;34–36 however, Salmonella spp. resistance to ampicillin was observed at lower rates in Japan, 17.9%; South Korea, 5.6% and Iran, 11.7%.37–39 Quinolone resistance is a current worldwide problem in human and veterinary medicine. The Salmonella isolates resisted to ciprofloxacin, norfloxacin and nalidixic acid by range from 21.6% to 43.2%. In comparison to the other results, higher rates of quinolones resistance (ciprofloxacin and nalidixic acid) have been reported in Salmonella isolated from poultry in the EU (64.7% and 61.5%), China (25.7% and 46.7%) and Brazil (86.5% and 89%).30,40,41 However, Salmonella isolated from broilers have shown a low resistance frequency to quinolones in Canada (3% and <1%) and in the USA (0% and <1%), which can be attributed to the restricted use of fluoroquinolones in poultry.2,42,43

Emergence of MDR bacteria, especially Enterobacteriaceae, has increased in recent years. In this study, 65.7% of the E. coli and and 62.2% of the Salmonella isolates showed MDR. The similar proportions of MDR were also reported for Salmonela isolates from Bangladesh, Nigeria and Malaysia;44,45,32 and for E. coli isolates from Vietnam, Malaysia and Ghana.45,24,46 The occurrence of MDR may be linked with indiscriminate use of antimicrobial agents. MDR makes the difficult treatment of infections caused by pathogenic bacteria in both poultry and humans. Thus, the use of antibiotics at poultry farms and households should be controlled to prevent the creation of MDR pathogenic strains.47-51

Conclusion

In this study, the prevalence of E. coli and Salmonella spp. detected in chicken farms in the north Vietnam was 59.4% and 7.2%, respectively. The isolates showed high resistance rates to tetracycline, ampicillin, strepmycin and trimethoprim; and its were fairly susceptible to ceftazidime, norfloxacin, ciprofloxacin. This varying degree of resistance shown by E. coli and Salmonell spp. supports the assertion that the poultry environment is a potential reservoir for antibiotic-resistant trains that can spread from the animals to the human population using poultry liter for farming purposes. In Vietnam, like in other developing countries, the indiscriminate and widespread use of antimicrobials in veterinary practice and the easy access to antimicrobials by farmers who can purchase them without any prescription should be addressed. These findings provide evidence for the emergence for the antimicrobial resistance of Salmonella spp. and E. coli in poultry farms in Vietnam. Future studies should focus on detection of resistance isolates from chicken, poultry environment, and humans to demonstrate the need for one health consideration in the usage of antibiotics in the poultry industry.

Acknowledgments

This study was supported by the Ministry of Agriculture and Rural Development, Vietnam. We thank the staff of the Department of Veterinary Hygiene, National Institute of Veterinary Research, Hanoi, Vietnam, for their technical assistance and the isolates providing. The authors would like to thank the students, technicians, and other individuals who helped us in sampling and processing.

Conflicts of interest

Author declares there is no conflict of interest in publishing the article.

Funding

None.

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